If you are planning to work on different projects and to count time for each one, than you have to download licenses for them. You have already downloaded a license at the start of you work in one project. Now you need to download another license for next working project, and employer will see your work in reports. Go to “Settings” inset in “Tools” chapter in your EmployeeAgent. Choose “License” division and push “Add” button. Set a path to your license file and finish downloading. From this moment you will need to choose a project and a license before start working and time tracking.
Note that you can't delete an active license with ongoing time tracking. Only after you stop the monitoring in the application menu, you may delete the license, which you don't need anymore.